Man pages for MadsAlbertsen/ampvis
Tools for visualising amplicon data
| amp_cleanMiF | Make raw MiDAS function data into ampvis format |
| amp_core | Generates a ggplot2 style core community plots |
| amp_correlation | Generates correlation networks from amplicon data. |
| amp_export | Export sequences from a phyloseq object |
| amp_export_table | Export otutable from a phyloseq object |
| amp_function | Generate a function table |
| amp_heatmap | Generate a heatmap from amplicon data |
| amp_load | Load data as OTU table and convert to a phyloseq object. |
| amp_ordinate | Generates a ggplot2 style ordinate plot of amplicon data. |
| amp_rabund | Generates a ggplot2 style rank abundance plot of the most... |
| amp_rarecurve | Calculate rarefaction curve for each sample. |
| amp_rename | Used for cleaning and renaming taxonomy in phyloseq objects |
| amp_stability | Calculate similarity over time |
| amp_stats | Calculate basic statistics for each sample |
| amp_test_cluster | Tests if there is a significant difference between samples. |
| amp_test_species | Tests if there is a significant difference in abundance... |
| amp_venn | Generates a ggplot2 style venn diagram |
| ampvis | ampvis: amplicon visualisation |
| data | Tests if there is a significant difference in abundance... |
