amp_rarecurve: Calculate rarefaction curve for each sample.

In MadsAlbertsen/ampvis: Tools for visualising amplicon data

Description

Calculate rarefaction curve for each sample using the vegan rarecurve function directly from a phyloseq object.

Usage

amp_rarecurve(data)

Arguments

data	(required) A phyloseq object.
step	Step size for sample sizes in rarefaction curves (default: 100).
ylim	vector of y-axis limits.
xlim	vector of x-axis limits.
label	Label rarefaction curves (default: F).
color	Color lines by metadata.
legend	Add a legend to the plot if color is used (default: T).
color.vector	Vector with colors e.g. c("red","white") (default: NULL).
legend.position	Position of the legend (default: "topleft").

Author(s)

Mads Albertsen [e-mail]

MadsAlbertsen/ampvis documentation built on May 7, 2019, 2:08 p.m.