amp_load: Load data as OTU table and convert to a phyloseq object.
In MadsAlbertsen/ampvis: Tools for visualising amplicon data
Description
Usage
Arguments
Value
Author(s)
Description
Load data as OTU table and convert to a phyloseq object.
Usage
1
amp_load(otutable, metadata)
Arguments
otutable
(required) A OTU table generated from workflow scripts v.4+.
metadata
(required) A metadata file with sample names in first column.
refseq
Reference sequences for all OTUs.
rarefy
Rarefy all samples to the same sequencing depth.
Value
A phyloseq object.
Author(s)
Mads Albertsen MadsAlbertsen85@gmail.com
MadsAlbertsen/ampvis documentation built on May 7, 2019, 2:08 p.m.
R Package Documentation
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Description Usage Arguments Value Author(s)
Description
Load data as OTU table and convert to a phyloseq object.
Usage
1 | amp_load(otutable, metadata)
|
Arguments
otutable |
(required) A OTU table generated from workflow scripts v.4+. |
metadata |
(required) A metadata file with sample names in first column. |
refseq |
Reference sequences for all OTUs. |
rarefy |
Rarefy all samples to the same sequencing depth. |
Value
A phyloseq object.
Author(s)
Mads Albertsen MadsAlbertsen85@gmail.com
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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