change_shape: change_shape

In Malindrie/scShapes: A Statistical Framework for Modeling and Identifying Differential Distributions in Single-cell RNA-sequencing Data

change_shape

Description

This function returns a list of genes changing shape between conditions and the list of genes changing distribution from a unimodal to distribution to a zero-inflated distribution

Usage

change_shape(shapes_genes)

Arguments

shapes_genes

A dataframe consisting of distributions followed by each gene passing the KS test. Where rows are genes and each column the treatment condition.

Value

A list of two lists with genes changing distribution shape between conditions. The list "All" contains all the genes changing distribution. The list "Uni2ZI" contains the genes changing distribution form a unimodal distribution in one condition to a zero-inflated distribution in another condition.

Malindrie/scShapes documentation built on Nov. 21, 2022, 8:58 a.m.