APclassify | Classify genes based on types of APUs |
APfit | Fit GLMs at the gene and promoter level |
APtest | Perform test for APU |
exampleData | Placeholder example data |
plot.APclassify | Plot APU classification results |
plot.APfit | Plot basic statistics for a single gene |
plot.APtest | Plot DE statistics for a single gene |
print.APclassify | Print basic info about APclassify |
print.APfit | #' @export print.APfit <- function(o) message("APfit object... |
print.APtest | #' @export print.APtest <- function(o) message("APtest object... |
singleClassify | Internal function: Classify single contrast |
singleContrast | Internal function: Test single contrast |
stackLegends | Internal function: Plot a ggplot2 legend over multiple colums |
stackPlots | Stack multiple single gene plots |
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