APfit: Fit GLMs at the gene and promoter level
In MalteThodberg/APhunteR: Find Alternative Promoters in CAGE data
Description
Usage
Arguments
Value
Examples
Description
Uses edgeR to fit a robust QL GLM to promoters and genes
Usage
1
APfit(promoterCounts, modelMatrix, geneIds)
Arguments
promoterCounts
matrix: Number of CAGE tags in each promoter.
modelMatrix
matrix: Full rank model matrix describing the experiment.
geneIds
character: Vector marking which genes promoters belong two.
Value
APfit object
Examples
1
# ADD EXAMPLES HERE
MalteThodberg/APhunteR documentation built on May 8, 2019, 3:24 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value Examples
Description
Uses edgeR to fit a robust QL GLM to promoters and genes
Usage
1 | APfit(promoterCounts, modelMatrix, geneIds)
|
Arguments
promoterCounts |
matrix: Number of CAGE tags in each promoter. |
modelMatrix |
matrix: Full rank model matrix describing the experiment. |
geneIds |
character: Vector marking which genes promoters belong two. |
Value
APfit object
Examples
1 | # ADD EXAMPLES HERE
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.