Files in ManuSetty/SeqGL
Group lasso for Dnase/ChIP-seq data
DESCRIPTION
NAMESPACE
R/SeqGL-internal.R
R/build_train_test_data.R
R/enriched_regions.R
R/get_seqs.R
R/group_lasso_utils.R
R/group_motifs.R
R/misc_utils.R
R/ml_utils.R
R/run_group_lasso.R
R/seqgl_wrappers.R
README.md
inst/doc/SeqGL.Rnw
inst/doc/SeqGL.pdf
inst/doc/SeqGL.tex
inst/extdata/gm12878_top_irf4_peaks.bed
inst/extdata/gm12878_top_pax5_peaks.bed
inst/extdata/wildcard_dict_kmer8_mismatches2_alpha5_consecutive_mis.Rdata
man/build.train.test.data.Rd
man/cluster.error.changes.Rd
man/determine.group.error.changes.Rd
man/determine.group.members.Rd
man/determine.group.scores.Rd
man/determine.peak.scores.Rd
man/extract.high.scoring.locations.Rd
man/get.seqs.Rd
man/group.lasso.Rd
man/group.lasso.eval.parameters.Rd
man/group.motifs.Rd
man/logistic.errors.Rd
man/plot.group.scores.Rd
man/run.clustering.Rd
man/run.group.lasso.Rd
man/run.seqgl.Rd
man/run.seqgl.wrapper.Rd
man/select.top.features.Rd
man/setup.matlab.Rd
