ChIP-seq data

Determine group membership

1 2	determine.group.members(labels, group.scores, peak.scores, test.classes = c(1, -1), fdr.cutoff = 0.05, no.cores = 1)

`labels`	Training labels (Should be +1/-1)
`group.scores`	Matrix of group scores
`peak.scores`	Matrix of example group scores
`test.classes`	Classes to determine group members
`fdr.cutoff`	q-value from examples of other class
`no.cores`	No of cores for parallel processing

`group.members`	Binary matrix of size no. of sequences x no. of groups indicating group membership
`group.pvals`	FDR-corrected p-value matrix of size no. of sequences x no. of groups

ManuSetty/SeqGL documentation built on March 14, 2021, 3:18 a.m.