Man pages for ManuSetty/SeqGL
Group lasso for Dnase/ChIP-seq data

build.train.test.dataFunction to extract sequences and build feature matrices
cluster.error.changesHierichal clustering of group error changes
determine.group.error.changesGroup scores for each group and example
determine.group.membersDetermine group membership
determine.group.scoresRanking of groups based on predictive power
determine.peak.scoresGroup scores for each group and example
extract.high.scoring.locationsFunction to extract high scoring regions for a particular...
get.seqsGet sequences for genomic reanges
group.lassoFunction to run group lasso with the specified parameters
group.lasso.eval.parametersGroup lasso cross validation
group.motifsFunction for finding motifs associate with each group
logistic.errorsFunction to determine logistic residuals
plot.group.scoresGroup score distribution
run.clusteringHierarchical clustering of features
run.group.lassoRun group lasso for peaks
run.seqglSeqGL pipeline
run.seqgl.wrapperWrapper for running Seqgl.
select.top.featuresFunction to select top features
setup.matlabsetup.matlab. Start matlab server
ManuSetty/SeqGL documentation built on May 7, 2019, 2:46 p.m.