ChIP-seq data

build.train.test.data	Function to extract sequences and build feature matrices
cluster.error.changes	Hierichal clustering of group error changes
determine.group.error.changes	Group scores for each group and example
determine.group.members	Determine group membership
determine.group.scores	Ranking of groups based on predictive power
determine.peak.scores	Group scores for each group and example
extract.high.scoring.locations	Function to extract high scoring regions for a particular...
get.seqs	Get sequences for genomic reanges
group.lasso	Function to run group lasso with the specified parameters
group.lasso.eval.parameters	Group lasso cross validation
group.motifs	Function for finding motifs associate with each group
logistic.errors	Function to determine logistic residuals
plot.group.scores	Group score distribution
run.clustering	Hierarchical clustering of features
run.group.lasso	Run group lasso for peaks
run.seqgl	SeqGL pipeline
run.seqgl.wrapper	Wrapper for running Seqgl.
select.top.features	Function to select top features
setup.matlab	setup.matlab. Start matlab server