Files in Manuelaio/uncoverappLib

Interactive graphical application for clinical assessment of sequence coverage at the base-pair level

.Rbuildignore

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/buildInput.R R/getAnnotationFiles.R R/run.uncoverapp.R R/uncoverappLib-package.R README.md inst/extdata/CONTACTS.md

inst/extdata/POLG.example.bed

inst/extdata/example_POLG.bam

inst/extdata/example_POLG.bam.bai

inst/extdata/intro.md

inst/extdata/mygene.txt

inst/extdata/prep_input.md

inst/extdata/script.js

inst/script/CONTACTS.txt

inst/script/POLG.example.bed.txt

inst/script/Rpreprocessing.R.txt

inst/script/example_POLG.bam.bai.txt

inst/script/example_POLG.bam.txt

inst/script/intro.txt

inst/script/pre_input.txt

inst/script/requiredLibraries.R

inst/script/script.js.txt

inst/shiny-dir/server-annotation.R inst/shiny-dir/server-binomial.R inst/shiny-dir/server-maxAF.R inst/shiny-dir/server-plots.R inst/shiny-dir/server-preprocess.R inst/shiny-dir/server-reactiveDF.R inst/shiny-dir/server-tables.R inst/shiny-dir/server.R

inst/shiny-dir/tests/bam.list

inst/shiny-dir/tests/mytest-expected/001.json

inst/shiny-dir/tests/mytest-expected/001.png

inst/shiny-dir/tests/mytest-expected/002.json

inst/shiny-dir/tests/mytest-expected/002.png

inst/shiny-dir/tests/mytest-expected/003.json

inst/shiny-dir/tests/mytest-expected/003.png

inst/shiny-dir/tests/mytest-expected/004.json

inst/shiny-dir/tests/mytest-expected/004.png

inst/shiny-dir/tests/mytest.R inst/shiny-dir/ui.R inst/tests/testthat.R inst/tests/testthat/test-uncoverappLib.R man/buildInput.Rd man/dot-get_cache.Rd man/getAnnotationFiles.Rd man/run.uncoverapp.Rd man/uncoverAPP.Rd man/uncoverappLib.Rd

vignettes/.gitignore

vignettes/all_gene.png

vignettes/annotate.png

vignettes/dbNSFP.png

vignettes/exon10tab.png

vignettes/exon_info.png

vignettes/load_file.png

vignettes/pre_file.png

vignettes/ucsc_info.png

vignettes/uncoverappLib.Rmd

Manuelaio/uncoverappLib documentation built on Feb. 16, 2023, 12:52 a.m.