API for MarioniLab/geneBasisR
What the Package Does (One Line, Title Case)
| Global functions | |
|---|---|
| .add_first_gene | Source code |
| .add_gene_to_current_selection | Source code |
| .assign_neighbors | Source code |
| .check_arg_within_options | Source code |
| .check_argument_correct | Source code |
| .check_batch | Source code |
| .check_boolean | Source code |
| .check_celltype_in_sce | Source code |
| .check_celltype_mapping_correct | Source code |
| .check_genes_in_sce | Source code |
| .check_integer_or_all | Source code |
| .check_integer_or_null | Source code |
| .check_n.neigh | Source code |
| .check_neighs.all_singleBatch | Source code |
| .check_neighs.all_stat | Source code |
| .check_positive_integer | Source code |
| .check_positive_integer_or_null | Source code |
| .check_sce | Source code |
| .check_string_or_null | Source code |
| .general_check_arguments | Source code |
| .get_MNN_corrected_mapping | Source code |
| .get_coexpression_stat_single_gene | Source code |
| .get_fraction_mapped_correctly | Source code |
| .get_hvgs | Source code |
| .get_mapping | Source code |
| .get_mapping_single_batch | Source code |
| .get_neighborhood_preservation_scores_single_batch | Source code |
| .get_neighs_all_stat_single_batch | Source code |
| .get_size_factors_single_batch | Source code |
| .getmode | Source code |
| .initiate_random_mapping | Source code |
| .log_normalise | Source code |
| .prepare_sce | Source code |
| .prepare_sce_cell_ids | Source code |
| .prepare_sce_counts | Source code |
| .update_sce_w_custom_celltype_id | Source code |
| calc_Minkowski_distances | Man page Source code |
| evaluate_library | Man page Source code |
| gene_search | Man page Source code |
| get_DE_genes | Man page Source code |
| get_celltype_mapping | Man page Source code |
| get_coexpression_stat | Man page Source code |
| get_gene_correlation_scores | Man page Source code |
| get_gene_prediction_scores | Man page Source code |
| get_neighborhood_preservation_scores | Man page Source code |
| get_neighs_all_stat | Man page Source code |
| get_redundancy_stat | Man page Source code |
| get_umap_coordinates | Man page Source code |
| plot_coexpression | Man page Source code |
| plot_expression_heatmap | Man page Source code |
| plot_mapping_heatmap | Man page Source code |
| plot_redundancy_stat | Man page Source code |
| plot_umaps_w_counts | Man page Source code |
| raw_to_sce | Man page Source code |
| retain_informative_genes | Man page Source code |
| sce_mouseEmbryo | Man page |
