Files in MarioniLab/geneBasisR
What the Package Does (One Line, Title Case)
.DS_Store
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/.DS_Store
R/calc_Minkowski_distances.R
R/evaluate_library.R
R/gene_search.R
R/get_DE_genes.R
R/get_celltype_mapping.R
R/get_coexpression_stat.R
R/get_gene_prediction_scores.R
R/get_neighborhood_preservation_scores.R
R/get_redundancy_stat.R
R/get_umap_coordinates.R
R/mapping_functions.R
R/raw_to_sce.R
R/retain_informative_genes.R
R/sce_mouseEmbryo.R
R/utils.R
R/visualization_functions.R
README.md
data/.DS_Store
data/sce_mouseEmbryo.rda
geneBasisR.Rproj
geneBasis_cartoon.png
inst/.DS_Store
inst/extdata/raw_spleen.txt
inst/extdata/raw_spleen_meta.txt
man/.DS_Store
man/calc_Minkowski_distances.Rd
man/evaluate_library.Rd
man/gene_search.Rd
man/get_DE_genes.Rd
man/get_celltype_mapping.Rd
man/get_coexpression_stat.Rd
man/get_gene_correlation_scores.Rd
man/get_gene_prediction_scores.Rd
man/get_neighborhood_preservation_scores.Rd
man/get_neighs_all_stat.Rd
man/get_redundancy_stat.Rd
man/get_umap_coordinates.Rd
man/plot_coexpression.Rd
man/plot_expression_heatmap.Rd
man/plot_mapping_heatmap.Rd
man/plot_redundancy_stat.Rd
man/plot_umaps_w_counts.Rd
man/raw_to_sce.Rd
man/retain_informative_genes.Rd
man/sce_mouseEmbryo.Rd
tests/testthat.R
tests/testthat/.DS_Store
tests/testthat/test_calc_Minkowski_distances.R
tests/testthat/test_cell_neighborhood_preservation.R
tests/testthat/test_evaluate_library.R
tests/testthat/test_gene_prediction_scores.R
tests/testthat/test_gene_search.R
tests/testthat/test_get_DE_genes.R
tests/testthat/test_get_celltype_mapping.R
tests/testthat/test_raw_to_sce.R
tests/testthat/test_retain_informative_genes.R
vignettes/.DS_Store
vignettes/.gitignore
vignettes/geneBasis_mouseEmbryo.Rmd
