create_table: Creates a single column of values that can be merged to form...

Description Usage Arguments Examples

Description

Creates a single column of values that can be merged to form a table of MSE values for a species-fleet combination

Usage

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create_table(results_folder_path, ifunc_groups, n_label_cols, col_name, year,
  first_year, fun, yearly_in_filename = NULL, fleet_group_number = NULL,
  area = 1, scale = 1, ...)

Arguments

results_folder_path

The path to the folder holding the csv file from which to create a table

ifunc_groups

The name of the functional group for which to create the table

n_label_cols

The number of label columns in the csv file before the numeric values

col_name

The name to give the column being created

year

The year in which to calculate the values

first_year

The first year of the simulation in the csv file

yearly_in_filename

Set to "Yearly" if you want to use a csv file that contains "Yearly" in the name

fleet_group_number

The fleet name as specified in the csv file title

area

If specified the output values are multiplied by this

scale

If specified the output values are divided by this

bref

The biomass reference point for which we are calculating the probability of going beneath. Specify in units of t/km2.

Examples

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blim_table_2010 <- create_table(results_folder_path = "C:/Users/Mark/Box Sync/Baltic - Stockholm/Results-and-plots-2017-09-08/Results/Biomass/",
fun = calc_prob_below,
ifunc_groups = functional_group,
yearly_in_filename = "Yearly",
n_label_cols = 4,
col_name = 'p(<Blim)',
year = 2010,
first_year = 1990,
bref = 0.4
)

yield_table_2012 <- create_table(results_folder_path = "C:/Users/Mark/Box Sync/Baltic - Stockholm/Results-and-plots-2017-09-08/Results/LandingsTrajectories/",
fun = calc_avg,
ifunc_groups = functional_group,
fleet_group_number = "AllFleets",
yearly_in_filename = "Yearly",
n_label_cols = 5,
col_name = 'avg(Y) (kt)',
year = 2012,
first_year = 2000,
area = 240000,
scale = 1000

)

MarkPlatts/mser documentation built on May 29, 2019, 2:32 p.m.