Files in MarkeyBBSRF/MEScan

.gitignore

DESCRIPTION

NAMESPACE

R/mcmc.R R/mescan_C.R README.md

example/mcmc/MEInput.Rdata

example/mcmc/projects.yaml

example/mcmc/snakemake/Snakefile

example/mcmc/snakemake/config.json

example/mcmc/snakemake/dag.mcmc.png

example/mcmc/snakemake/scripts/detect_multi_sets_jaccard.py

example/mcmc/snakemake/scripts/filter_mcmc.py

example/mcmc/snakemake/scripts/geneset_freq.py

example/mcmc/snakemake/scripts/geneset_freq_single.py

example/mcmc/snakemake/scripts/get_threshold.R example/mcmc/snakemake/scripts/get_tunning.R example/mcmc/snakemake/scripts/index2gene.R

example/mcmc/snakemake/scripts/mergeFreq.py

example/mcmc/snakemake/scripts/runMCMC_nseeds.R example/prep_input/create_mescan_input.R example/prep_input/src/Step1ForObtainingSilentAndNonsilentTable.R example/prep_input/src/Step2GetMutationRate.R example/prep_input/src/Step3GetBij.R example/prep_input/src/Step4GetObsMat.R example/prep_input/src/Step5GetMatrixOfRateAndMut.R example/readme.md

example/scan_genesets/MEScanInput.RData

example/scan_genesets/scan_genesets.R man/mcmc_core.Rd man/mcmc_tuning.Rd man/scan_genesets.Rd

simulation/CoMEt/testPythonre_test.py

simulation/Denrix/CompareDendrix.py

simulation/MESGA/ComparingMSEGA_win.R simulation/MESGA/MEGSA.R simulation/MEScan/MEScan.R simulation/TiMEx/TiMEXres100DiffMutGenecopy.R simulation/TiMEx/timex genesets.R

simulation/WExT/testPythonwre_test.py

simulation/generate_data/GenerateMutationTable.R simulation/generate_data/SimulationFunction.R simulation/generate_data/SimulationFunctionAddTP53.R simulation/plot_simulation/Plot of Comparison sqrt(theta).R simulation/simulation.md

src/mescan.h

src/mescan_mcmc.c

src/mescan_utils.c

src/utils.c

MarkeyBBSRF/MEScan documentation built on Nov. 19, 2020, 4:49 a.m.