Files in MarkeyBBSRF/MEScan

.gitignore
DESCRIPTION
NAMESPACE
R/mcmc.R R/mescan_C.R README.md
example/mcmc/MEInput.Rdata
example/mcmc/projects.yaml
example/mcmc/snakemake/Snakefile
example/mcmc/snakemake/config.json
example/mcmc/snakemake/dag.mcmc.png
example/mcmc/snakemake/scripts/detect_multi_sets_jaccard.py
example/mcmc/snakemake/scripts/filter_mcmc.py
example/mcmc/snakemake/scripts/geneset_freq.py
example/mcmc/snakemake/scripts/get_threshold.R example/mcmc/snakemake/scripts/get_tunning.R example/mcmc/snakemake/scripts/index2gene.R
example/mcmc/snakemake/scripts/mergeFreq.py
example/mcmc/snakemake/scripts/runMCMC_nseeds.R example/prep_input/create_mescan_input.R example/prep_input/src/Step1ForObtainingSilentAndNonsilentTable.R example/prep_input/src/Step2GetMutationRate.R example/prep_input/src/Step3GetBij.R example/prep_input/src/Step4GetObsMat.R example/prep_input/src/Step5GetMatrixOfRateAndMut.R example/readme.md
example/scan_genesets/MEScanInput.RData
example/scan_genesets/scan_genesets.R man/mcmc_core.Rd man/mcmc_tuning.Rd man/scan_genesets.Rd
simulation/CoMEt/testPythonre_test.py
simulation/Denrix/CompareDendrix.py
simulation/MESGA/ComparingMSEGA_win.R simulation/MESGA/MEGSA.R simulation/MEScan/MEScan.R simulation/TiMEx/TiMEXres100DiffMutGenecopy.R simulation/TiMEx/timex genesets.R
simulation/WExT/testPythonwre_test.py
simulation/generate_data/GenerateMutationTable.R simulation/generate_data/SimulationFunction.R simulation/generate_data/SimulationFunctionAddTP53.R simulation/plot_simulation/Plot of Comparison sqrt(theta).R simulation/simulation.md
src/mescan.h
src/mescan_mcmc.c
src/mescan_utils.c
src/utils.c
MarkeyBBSRF/MEScan documentation built on Oct. 30, 2019, 9:16 p.m.