scan_genesets: Return TG scores for the gene sets combinations from...
In MarkeyBBSRF/MEScan:
Description
Usage
Arguments
Value
Description
Return TG scores for the gene sets combinations from gs_idx,
with size of n.
Usage
1
scan_genesets(gs_idx, n = 2, mut_data, rate_data, lambda)
Arguments
gs_idx
A vector of genes index
n
The size of the gene sets
mut_data
Mutation table created using MADGIC algorithm.
lambda
lambda.
mut_rate
Mutation rate table create uisng MADGIC algorithm.
Value
A list contains the gene set with maximun TG score, the maximum TG score and all the scanned gene sets
MarkeyBBSRF/MEScan documentation built on Nov. 19, 2020, 4:49 a.m.
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Description Usage Arguments Value
Description
Return TG scores for the gene sets combinations from gs_idx,
with size of n.
Usage
1 | scan_genesets(gs_idx, n = 2, mut_data, rate_data, lambda)
|
Arguments
gs_idx |
A vector of genes index |
n |
The size of the gene sets |
mut_data |
Mutation table created using MADGIC algorithm. |
lambda |
lambda. |
mut_rate |
Mutation rate table create uisng MADGIC algorithm. |
Value
A list contains the gene set with maximun TG score, the maximum TG score and all the scanned gene sets
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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