mcmc_tuning: Select tuning parameters for Markov Chain Monte Carlo (MCMC)...

Description Usage Arguments Value

View source: R/mcmc.R

Description

Select tuning parameters for Markov Chain Monte Carlo (MCMC) sampling based on the size of the gene sets

Usage

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mcmc_tuning(mut_data, mut_rate, num_iters = 1000, burning = 0,
  mcmc_tuning, tg_lambda, seed = -1, range = c(2:3))

Arguments

mut_data

Mutation table created using MADGIC algorithm.

mut_rate

Mutation rate table create uisng MADGIC algorithm.

num_iters

Number of MCMC samples.

burning

Number of Burn-in samples.

mcmc_tuning

MCMC initial tuning parameter, .

tg_lambda

lambda

seed

Seed for RGN.

Value

tuning parameter after the selection


MarkeyBBSRF/MEScan documentation built on Nov. 19, 2020, 4:49 a.m.