TnT-shiny: Shiny bindings for TnT

In Marlin-Na/TnT: Interactive Visualization for Genomic Features

Shiny bindings for TnT

Description

Output and render functions for using TnT within Shiny applications and interactive Rmd documents.

Usage

TnTOutput(outputId, width = "100%", height = "auto")

renderTnT(expr, env = parent.frame(), quoted = FALSE)

Arguments

outputId	output variable to read from
width, height	Must be a valid CSS unit (like '100%', '400px', 'auto') or a number, which will be coerced to a string and have 'px' appended.
expr	An expression that generates a TnTBoard/TnTGenome object.
env	The environment in which to evaluate expr.
quoted	Is expr a quoted expression (with quote())? This is useful if you want to save an expression in a variable.

Value

An output or render function that enables the use of the converted htmlwidget within Shiny applications.

Examples

library(shiny)

ui <- fluidPage(fluidRow(
    column(width = 2, {
        "A Simple Example Here"
    }),
    column(width = 10, {
        TnTOutput("out")
    })
))
server <- function (input, output) {
    re.btrack <- reactive({
        gr <- GRanges("chr12", IRanges(100, 1000))
        BlockTrack(gr)
    })
    output$out <- renderTnT({
        TnTBoard(re.btrack())
    })
}
## Not run: 
shinyApp(ui = ui, server = server)

## End(Not run)

Marlin-Na/TnT documentation built on Sept. 15, 2024, 5:27 a.m.