seqinfo: Seqinfo of TnTTrack and TnTBoard

In Marlin-Na/TnT: Interactive Visualization for Genomic Features

Seqinfo of TnTTrack and TnTBoard

Description

Seqinfo of TnTTrack and TnTBoard

Usage

## S4 replacement method for signature 'RangeBasedTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

## S4 method for signature 'RangeBasedTrack'
seqinfo(x)

## S4 method for signature 'RangeBasedTrack'
seqlevelsInUse(x)

## S4 method for signature 'TnTBoard'
seqinfo(x)

## S4 method for signature 'CompositeTrack'
seqinfo(x)

## S4 replacement method for signature 'CompositeTrack'
seqinfo(x, new2old = NULL, pruning.mode = c("error", "coarse", "fine", "tidy")) <- value

## S4 method for signature 'CompositeTrack'
seqlevelsInUse(x)

Arguments

x	A TnTTrack or TnTBoard object.
new2old, pruning.mode, value	Passed to seqinfo method for GenomicRanges.

Value

seqinfo returns a SeqInfo object.

Examples

btrack1 <- BlockTrack(GRanges("chr1", IRanges(1, 123)))
btrack2 <- BlockTrack(GRanges("chr2", IRanges(3, 599)))
ctrack <- merge(btrack1, btrack2)
board <- TnTBoard(list(btrack1, btrack2))

seqinfo(btrack1)
seqinfo(btrack2)
seqinfo(ctrack)
seqinfo(board)

Marlin-Na/TnT documentation built on Sept. 15, 2024, 5:27 a.m.