Man pages for MartinFXP/B-NEM
training of logical models from indirect measurements of perturbation experiments

absorptionapplies absorption law to a disjuncitve normal form
absorptionIIapplies "inverse" absorption law to a disjuncitve normal form
bnemBoolean Nested Effects Model main function
computeFccomputes response scheme given an activation pattern...
convertGraphconverts a disjunctive normal form into a conjunctive normal...
dummyCNOlistcreates a general CNOlist object from meta information
epiNEM2BgConvert epiNEM model into general Boolean graph. Only needed...
findResidualscalculates residuals (data and optimized network do not...
heatmapOPheatmap function based on the lattice package with several...
plotDnffunction for visualizing graphs in normal form
randomDnfcreates a random normal form or hyper-graph
reduceGraphreduces the size of a graph if ossible to an equivalent...
simulateStatesRecursivesimulates the activation pattern (truth table) of a...
transClosecalculates transitive closure of a hyper-graph
transRedcalculates transitive reduciton of a hyper-graph in normal...
validateGraphplotting the observed response scheme of an effect reporter...
MartinFXP/B-NEM documentation built on June 24, 2017, 2:34 a.m.