API for MartinFXP/B-NEM
Training of logical models from indirect measurements of perturbation experiments

Global functions
absorption	Man page Source code
absorptionII	Man page Source code
addEdge	Source code
addNoise	Man page Source code
addSignal	Source code
adj2dnf	Source code
adj2graph	Source code
bcr	Man page
bnem	Man page Source code
bnemBs	Man page Source code
checkCNOlist	Source code
checkMethod	Source code
checkNEMlist	Source code
computeFc	Man page
computeScoreNemT1	Source code
convertGraph	Man page Source code
createCube	Source code
deleteEdge	Source code
deleteSignal	Source code
disc	Source code
dnf2adj	Source code
drawLocal	Source code
drawScores	Source code
dummyCNOlist	Man page Source code
epiNEM2Bg	Man page Source code
exSearch	Source code
expNorm	Source code
expandNEM	Source code
exportVars	Source code
findResiduals	Man page Source code
getHierarchy	Source code
graph2adj	Source code
isDag	Source code
kmeansNorm	Source code
localSearch	Source code
makeDesign	Source code
makeDesignFull	Source code
pamNorm	Source code
plot.bnem	Man page Source code
plot.bnemBs	Man page Source code
plot.bnemsim	Man page Source code
preprocessInput	Source code
processDataBCR	Man page Source code
randomDnf	Man page Source code
reduceGraph	Man page Source code
removeCycles	Source code
scoreDnf	Man page Source code
simBoolGtn	Man page Source code
simpleNorm	Source code
simulateDnf	Source code
simulateStatesRecursive	Man page Source code
simulateStatesRecursiveAdd	Source code
smoothMatrix	Source code
transClose	Man page Source code
transRed	Man page Source code
validateGraph	Man page Source code

MartinFXP/B-NEM documentation built on Oct. 27, 2023, 8:24 p.m.

Note that we can't provide technical support on individual packages. You should contact the package authors for that.