Man pages for MartinFXP/bnem
Training of logical models from indirect measurements of perturbation experiments
| absorption | Absorption |
| absorptionII | Inverse absorption |
| addNoise | Add noise |
| bcr | B-Cell receptor signalling perturbations |
| bnem | Boolean Nested Effects Model main function |
| bnemBs | Bootstraped Network |
| computeFc | Compute differential effects |
| convertGraph | Convert normal form |
| dummyCNOlist | Create dummy CNOlist |
| epiNEM2Bg | Switch between epiNEM and B-NEM |
| findResiduals | Compute residuals |
| plot.bnem | plot bnem opbject |
| plot.bnembs | Plot Bootstrap result |
| plot.bnemsim | plot simulation object |
| processDataBCR | BCR perturbation reproduction |
| randomDnf | sample normal form |
| reduceGraph | Reduce graph |
| scoreDnf | score a boolean network |
| simBoolGtn | Sample random network and simulate data |
| simulateStatesRecursive | Simulate states |
| transClose | transitive closure |
| transRed | transitive reduction |
| validateGraph | validate graph |
