processDataBCR: BCR perturbation reproduction

In MartinFXP/bnem: Training of logical models from indirect measurements of perturbation experiments

BCR perturbation reproduction

Description

Produce the application data from the BCR paper of Pirkl, et al., 2016, Bioinformatics. Raw data is available at https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68761

Usage

processDataBCR(path = "", combsign = FALSE)

Arguments

path	path to the CEL.gz/Cel files
combsign	if TRUE includes all covariates in ComBat analysis to estimate batch effects.

Value

list with the full foldchanges and epxression matrix, a reduced foldchange matrix and the design matrix for the computations

Author(s)

Martin Pirkl

Examples

## Not run: 
processDataBCR()

## End(Not run)
data(bcr)

MartinFXP/bnem documentation built on Nov. 5, 2024, 11:57 a.m.