readBeads: Process the bead dataset

In MathurinD/extractlxb: lxb extraction functions

Description

Process the bead dataset

Usage

readBeads(lxb_dataset, region, analyte, controls, blanks,
  wells_per_treatment_with_blank, plot_dir = "", externals = c(""),
  PLOT = FALSE, verbose = TRUE)

Arguments

lxb_dataset	The lxb dataset
region	Beads IDs used
analyte	Analyte corresponding to the analysis.
controls	Wells containing control conditions.
blanks	Wells containing no cell.
wells_per_treatment_with_blank	List of wells where each treatment is applied. It is a list where each entry is named after a treatment and contains a vector of well names.
externals	Wells to exclude from the processing
PLOT	Whether data should be plotted

MathurinD/extractlxb documentation built on Feb. 25, 2020, 8:41 p.m.