Man pages for MaximeWack/R2b2
R package to manage an i2b2 instance and import data
| add_body | Add the body to the message |
| add_encounters | Add encounters to the CRC cell |
| add_header | Add the header to the message |
| add_observations | Add observations to the CRC cell |
| add_ont | Add an ontology to metadata |
| add_patients_demodata | Add patients to the CRC cell |
| add_patients_imdata | Add patients to the IM cell |
| add_project | Add a project |
| add_user | Add an user |
| add_user_roles | Add user roles |
| add_users | Add multiple users |
| base_msg | Create base XML message |
| clear_default_demodata | Clear the default demodata tables |
| clear_default_imdata | Clear the default imdata tables |
| clear_default_metadata | Clear the default metadata tables |
| clear_default_workdata | Clear workspace tables |
| clear_demodata | Clear the demodata tables |
| clear_table | Clear a database table |
| clear_webclient | Clear the default credentials in the webclient |
| create_admin | Create system and database admin accounts |
| create_password | Generate a random password |
| dbPush | Push a dataframe into a database table |
| dbUpdate | Update a dataframe into a database table |
| dbUpsert | Upserta dataframe into a database table |
| delete_concept | Delete concepts |
| delete_modifier | Delete modifiers |
| delete_ont | Delete an ontology from metadata |
| delete_project | Delete a project |
| delete_users | Delete users |
| fresh_install | Make a fresh install from the base VM |
| get_domain | Get the domain |
| get_ont | Fetch an ontology |
| import_patients_visits | Import patients and their visits |
| list_concepts | List concepts |
| list_ont | List the available ontologies |
| list_projects | List projects |
| list_schemes | List the available schemes |
| list_user_roles | List user roles |
| list_users | List users |
| pipe | Pipe operator |
| populate_concept | Populate the concept_dimension |
| populate_ont | Populate an empty ontology table |
| populate_provider | Populate the provider_dimension |
| rebuild_indexes_demodata | Rebuild the indexes |
| send_msg | Send the message |
| service | Manage services |
| set_domain | Set the domain |
| set_permissions | Set the permissions for the webclient and wildfly folders |
