populate_ont: Populate an empty ontology table
In MaximeWack/R2b2: R package to manage an i2b2 instance and import data

Populate an empty ontology table

populate_ont(ont, modi = NULL, scheme, include_code = T,
  def_facttablecolumn = "concept_cd", def_tablename = "concept_dimension",
  def_columnname = "concept_path", def_columndatatype = "T",
  def_operator = "LIKE", host = "", admin = "", pass = "")

`ont`	The ontology to insert
`modi`	The modifiers to insert
`scheme`	The scheme to use for this ontology
`include_code`	Whether to include the code in the label or not
`def_facttablecolumn`	Default value for that column
`def_tablename`	Default value for that column
`def_columnname`	Default value for that column
`def_columndatatype`	Default value for that column
`def_operator`	Default value for that column
`host`	The host to connect to
`admin`	The admin account for the PostgreSQL database
`pass`	the password for the admin account

Populate an ontology table ont is a dataframe containing at least the c_fullname column, a character vector containing all the leaves of the ontology with their respective path, in the form code_level1 label_level1\code_level2 label_level2\...\code_leaf label_leaf The function rebuilds the folders automatically

modi is a dataframe containing at least the c_fullname column, a character vector containing the modifiers, in the form code_modi label_modi The modifiers apply on all the ontology

MaximeWack/R2b2 documentation built on May 8, 2019, 9:52 a.m.