Files in MayaGans/CoreMicro
Testing Widely Used Core Microbiome Assignment Methods
.Rbuildignore
.github/workflows/check-standard.yml
.github/workflows/main.yml
.github/workflows/pkgdown.yml
.gitignore
CODE_OF_CONDUCT.md
Core_Micro_Package.Rproj
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
R/abundance_core.R
R/abundancea_and_occupancy_core.R
R/arabidposis_rhizo-data.R
R/common_core.R
R/core_methods.R
R/core_plots.R
R/core_venn.R
R/global.R
R/hard_cutoff.R
R/human_stool-data.R
R/occupancy_core.R
R/summarise_taxa.R
R/sysdata.rda
R/transpose_taxa.R
R/utils-pipe.R
R/utils.R
README.md
_pkgdown.yml
codecov.yml
core_micro.Rproj
cran-comments.md
data-raw/arabidopsis.R
data-raw/human.R
data/arab_working_set.rda
data/arabidopsis_rhizo.rda
data/human_stool.rda
data/human_working_set.rda
docs/404.html
docs/LICENSE-text.html
docs/LICENSE.html
docs/articles/analysis_and_plots.html
docs/articles/analysis_and_plots_files/figure-html/unnamed-chunk-10-1.png
docs/articles/index.html
docs/authors.html
docs/bootstrap-toc.css
docs/bootstrap-toc.js
docs/docsearch.css
docs/docsearch.js
docs/index.html
docs/link.svg
docs/news/index.html
docs/pkgdown.css
docs/pkgdown.js
docs/pkgdown.yml
docs/reference/arabidopsis.html
docs/reference/core_methods.html
docs/reference/core_plots.html
docs/reference/figures/plot.png
docs/reference/hard_cutoff.html
docs/reference/index.html
docs/reference/pipe.html
docs/reference/prop_reads.html
docs/reference/prop_reads_and_reps.html
docs/reference/prop_reps.html
docs/reference/summarize_OTUS.html
man/abundance_and_occupancy_core.Rd
man/abundance_core.Rd
man/arabidopsis_rhizo.Rd
man/common_core.Rd
man/core_methods.Rd
man/core_plots.Rd
man/core_venn.Rd
man/figures/plot.png
man/hard_cutoff.Rd
man/human_stool.Rd
man/occupancy_core.Rd
man/pipe.Rd
man/summarise_taxa.Rd
man/transpose_taxa.Rd
tests/testthat.R
tests/testthat/test-core_methods.R
tests/testthat/test-core_plots.R
tests/testthat/test-summarise_taxa.R
vignettes/.gitignore
vignettes/Analysis for Custer et al. 2023/additional_beta_diversity_analsyis .Rmd
vignettes/Analysis for Custer et al. 2023/figure_1.Rmd
vignettes/Analysis for Custer et al. 2023/figure_2.Rmd
vignettes/Analysis for Custer et al. 2023/figure_3.Rmd
