arabidopsis_rhizo: Descritpion for subset of Arabidopsis dataset used for...

In MayaGans/CoreMicro: Testing Widely Used Core Microbiome Assignment Methods

Descritpion for subset of Arabidopsis dataset used for comparison of core assignment methods

Description

Data derived from Lundberg et al. 2012. Dataset used for core assignment comparisons is a subset of the entire core Arabidopsis thaliana root microbiome dataset. We utilized only the rhizosphere samples from the M21 site for our comparisons of core assignment methods.

Usage

data(arabidopsis)

Format

An object of class data.frame with 14890 rows and 289 columns.

Details

Script used to prune dataset to only rhizosphere samples can be found (here).

Source

Nature

References

D.S. Lundberg, S.L. Lebeis, S.H. Paredes, S. Yourstone, J. Gehring, S. Malfatti, J. Tremblay, A. Engelbrektson, V. Kunin, T.G. del Rio, R.C. Edgar, T. Eickhorst, R.E. Ley, P. Hugenholtz, S.G. Tringe, J.L. Dangl, Defining the core Arabidopsis thaliana root microbiome, Nature. 488 (2012) 86–90. doi:10.1038/nature11237. (Nature)

What does QTL Archive thing mean?

Examples

## Not run: data(arabidopsis_rhizo)
## Not run: core_methods(arabidopsis_rhizo)

MayaGans/CoreMicro documentation built on March 5, 2023, 2:54 a.m.