core_venn: Core Venn Diagram

In MayaGans/CoreMicro: Testing Widely Used Core Microbiome Assignment Methods

Core Venn Diagram

Description

Create a venn diagram using the output of core_methods to find which core taxa are included in which methods

Usage

core_venn(
  combined_taxa_data,
  category_names = c("Summation of \n Sequence Reads",
    "Proportion of \n Sequence Replicates",
    "Proportion of \n Sequence Reads and Replicates", "Hard Cut Off"),
  low = "white",
  high = "#7E191B"
)

## Default S3 method:
core_venn(
  combined_taxa_data,
  category_names = c("Summation of \n Sequence Reads",
    "Proportion of \n Sequence Replicates",
    "Proportion of \n Sequence Reads and Replicates", "Hard Cut Off"),
  low = "white",
  high = "#7E191B"
)

## S3 method for class 'core_methods'
core_venn(
  combined_taxa_data,
  category_names = c("Summation of \n Sequence Reads",
    "Proportion of \n Sequence Replicates",
    "Proportion of \n Sequence Reads and Replicates", "Hard Cut Off"),
  low = "white",
  high = "#7E191B"
)

Arguments

combined_taxa_data	the taxa data of type core_methods
category_names	the names of the core inclusion methods.
low	the low hexedicmal color
high	the high hexidecimal color

Value

a venn diagram of the taxa included within each core method

Examples

## Not run: 
core_arabidopsis <- core_methods(arabidopsis)
core_venn(core_arabidopsis)

## End(Not run)

MayaGans/CoreMicro documentation built on March 5, 2023, 2:54 a.m.