human_stool: Descritpion for subset of the human microbiome dataset used...

In MayaGans/CoreMicro: Testing Widely Used Core Microbiome Assignment Methods

Descritpion for subset of the human microbiome dataset used for comparison of core assignment methods. Methods for filtering of the original dataset can be found in data-raw/human.R.

Description

#' Script used to prune dataset to only rhizosphere samples can be found (here).

Usage

data(human_stool)

Format

An object of class data.frame with 11752 rows and 320 columns.

Source

https://hmpdacc.org/ihmp/

http://downloads.hmpdacc.org/data/HMQCP/otu_table_psn_v35.txt.gz

http://downloads.hmpdacc.org/data/HMQCP/v35_map_uniquebyPSN.txt.bz2

References

Consortium, Human Microbiome Project, and others. 2012. “Structure, Function and Diversity of the Healthy Human Microbiome.” Nature 486 (7402). Nature Research: 207–14.

Examples

## Not run: data(human_stool)
## Not run: core_methods(human_stool)

MayaGans/CoreMicro documentation built on March 5, 2023, 2:54 a.m.