Man pages for MayaGans/CoreMicro
Testing Widely Used Core Microbiome Assignment Methods
| abundance_and_occupancy_core | Proportion of Reads and Replicates: |
| abundance_core | Summation of Reads: |
| arabidopsis_rhizo | Descritpion for subset of Arabidopsis dataset used for... |
| common_core | Common Core |
| core_methods | Combine Methods |
| core_plots | Generate a plot using the output from 'combined_methods' |
| core_venn | Core Venn Diagram |
| hard_cutoff | Hard Cut-Off |
| human_stool | Descritpion for subset of the human microbiome dataset used... |
| occupancy_core | Proportion of Replicates |
| pipe | Pipe operator |
| summarise_taxa | Calculate the mean, variance and CV of each OTU |
| transpose_taxa | If data are arranged where taxa are columns and sites rows we... |
