DATASET_Bauges_PFG | Dataset Bauges PFG |
divLeinster | Find cutoff to transform abundance values into binary values |
dot-adaptMaps | Adapt all raster maps of a 'FATE' simulation folder (change... |
dot-createParams | Create a parameters file |
dot-getCutoff | Find cutoff to transform abundance values into binary values |
dot-getELLIPSE | Obtain ellipse coordinates from (PCO) X,Y and a factor value |
dot-getOS | Find operating system of your computer |
dot-getParam | Extract parameter value(s) from a parameter file |
dot-loadData | Load a dataset |
dot-loadPackage | Load a 'R' package and install it if necessary |
dot-setParam | Replace parameter value(s) from a parameter file |
dot-setPattern | Replace a pattern with a new within all parameter files of a... |
dot-unzip_ALL | Compress ('.tif', '.img') or decompress ('.gz') files... |
dot-upscaleMaps | Upscale / crop all raster maps of a 'FATE' simulation folder |
FATE.run | Run a 'FATE' simulation |
POST_FATE.binaryMaps | Create binary maps for each Plant Functional Group for one... |
POST_FATE.graphic_evolutionCoverage | Create a graphical representation of the evolution of PFG... |
POST_FATE.graphic_evolutionPixels | Create a graphical representation of the evolution of PFG... |
POST_FATE.graphic_evolutionStability | Create a graphical representation of the evolution of habitat... |
POST_FATE.graphic_mapPFG | Create a map related to plant functional group results... |
POST_FATE.graphic_mapPFGvsHS | Create maps of both habitat suitability and simulated... |
POST_FATE.graphics | Create all possible graphical representations for a 'FATE'... |
POST_FATE.graphic_validationStatistics | Create a graphical representation of several statistics for... |
POST_FATE.relativeAbund | Create relative abundance maps for each Plant Functional... |
POST_FATE.temporalEvolution | Create tables of pixel temporal evolution of PFG abundances... |
PRE_FATE.abundBraunBlanquet | Transform Braun-Blanquet values into relative abundances |
PRE_FATE.params_changingYears | Create _SCENARIO_ parameter files for a 'FATE' simulation |
PRE_FATE.params_globalParameters | Create _Global_parameters_ parameter file for a 'FATE'... |
PRE_FATE.params_multipleSet | Create multiple set(s) of parameter files for a 'FATE'... |
PRE_FATE.params_PFGdispersal | Create _DISPERSAL_ parameter files for a 'FATE' simulation |
PRE_FATE.params_PFGdisturbance | Create _DISTURBANCE_ parameter files for a 'FATE' simulation |
PRE_FATE.params_PFGdrought | Create _DROUGHT_ parameter files for a 'FATE' simulation |
PRE_FATE.params_PFGlight | Create _LIGHT_ parameter files for a 'FATE' simulation |
PRE_FATE.params_PFGsoil | Create _SOIL_ parameter files for a 'FATE' simulation |
PRE_FATE.params_PFGsuccession | Create _SUCCESSION_ parameter files for a 'FATE' simulation |
PRE_FATE.params_savingYears | Create _SAVE_ parameter files for a 'FATE' simulation |
PRE_FATE.params_simulParameters | Create _Simul_parameters_ parameter file for a 'FATE'... |
PRE_FATE.selectDominant | Selection of dominant species from abundance releves |
PRE_FATE.skeletonDirectory | Create the skeleton folder for a 'FATE' simulation |
PRE_FATE.speciesClustering_step1 | Create clusters based on dissimilarity matrix |
PRE_FATE.speciesClustering_step2 | Choose clusters and select determinant species |
PRE_FATE.speciesClustering_step3 | Calculate PFG traits values based on determinant species... |
PRE_FATE.speciesDistance | Computation of distances between species based on traits and... |
RFATE.run | Shiny application to apply 'RFate' functions and run 'FATE'... |
SAVE_FATE.step1_PFG | Save data to reproduce building of Plant Functional Groups |
SAVE_FATE.step2_parameters | Save data to reproduce building of parameter files |
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