Man pages for MayaGueguen/RFate
Vegetation modelling with the FATE-HD model

dot-createParamsCreate a parameters file
dot-getParamExtract a parameter value(s) from a parameter file
dot-loadPackageLoad a 'R' package and install it if necessary
FATE_BaugesBauges simulation folder
MontBlancMont Blanc dataset
POST_FATE.graphic_evolutionAbund_pixelsCreate a graphical representation of the evolution of PFG...
POST_FATE.graphic_evolutionCoverageCreate a graphical representation of the evolution of PFG...
POST_FATE.graphic_evolutionLight_pixelsCreate a graphical representation of the evolution of light...
POST_FATE.graphic_evolutionSoil_pixelsCreate a graphical representation of the evolution of soil...
POST_FATE.graphic_mapPFGcoverCreate a map of the Plant Functional Group cover for one (or...
POST_FATE.graphic_mapPFGlightCreate a map of the community weighted mean (CWM) of light...
POST_FATE.graphic_mapPFGrichnessCreate a map of the Plant Functional Group richness for one...
POST_FATE.graphic_mapPFGsoilCreate a map of the community weighted mean (CWM) of soil for...
POST_FATE.graphic_mapPFGvsHSCreate maps of both Habitat suitability and simulated...
POST_FATE.graphicsCreate all possible graphical representations for a 'FATE-HD'...
POST_FATE.graphic_validationStatisticsCreate a graphical representation of several statistics for...
POST_FATE.relativeAbundCreate relative abundance maps for each Plant Functional...
PRE_FATE.abundBraunBlanquetTransform Braun-Blanquet values into relative abundances
PRE_FATE.params_changingYearsCreate _SCENARIO_ parameter files for a 'FATE-HD' simulation
PRE_FATE.params_globalParametersCreate _Global_parameters_ parameter file for a 'FATE-HD'...
PRE_FATE.params_multipleSetCreate multiple set(s) of parameter files for a 'FATE-HD'...
PRE_FATE.params_PFGdispersalCreate _DISPERSAL_ parameter files for a 'FATE-HD' simulation
PRE_FATE.params_PFGdisturbanceCreate _DISTURBANCE_ parameter files for a 'FATE-HD'...
PRE_FATE.params_PFGlightCreate _LIGHT_ parameter files for a 'FATE-HD' simulation
PRE_FATE.params_PFGsoilCreate _SOIL_ parameter files for a 'FATE-HD' simulation
PRE_FATE.params_PFGsuccessionCreate _SUCCESSION_ parameter files for a 'FATE-HD'...
PRE_FATE.params_saveYearsCreate _SAVE_ parameter files for a 'FATE-HD' simulation
PRE_FATE.params_simulParametersCreate _Simul_parameters_ parameter file for a 'FATE-HD'...
PRE_FATE.selectDominantSelection of dominant species from abundance releves
PRE_FATE.skeletonDirectoryCreate the skeleton folder for a 'FATE-HD' simulation
PRE_FATE.speciesClustering_step1Create clusters based on dissimilarity matrix
PRE_FATE.speciesClustering_step2Choose clusters and select determinant species
PRE_FATE.speciesClustering_step3Calculate PFG traits values based on determinant species...
PRE_FATE.speciesDistanceComputation of distances between species based on traits and...
MayaGueguen/RFate documentation built on Sept. 10, 2019, 8:54 p.m.