In McTavishLab/physcraperex: Physcraper Workflow Examples
From TreeBASE
Using physcraper and the arguments -tb and -no_est
physcraper_run.py -s pg_2827 -t tree6577 -tb -no_est -o data/pg_2827_tree6577
Downloading the alignment directly from a repository
The alignments are here https://treebase.org/treebase-web/search/study/matrices.html?id=1091
On a mac you can do:
wget "http://purl.org/phylo/treebase/phylows/matrix/TB2:M2478?format=nexus" -o data-raw/alignments/T1281-M2478.nex
Other repos
McTavishLab/physcraperex documentation built on April 10, 2021, 12:02 a.m.
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From TreeBASE
Using physcraper and the arguments -tb and -no_est
physcraper_run.py -s pg_2827 -t tree6577 -tb -no_est -o data/pg_2827_tree6577
Downloading the alignment directly from a repository
The alignments are here https://treebase.org/treebase-web/search/study/matrices.html?id=1091
On a mac you can do:
wget "http://purl.org/phylo/treebase/phylows/matrix/TB2:M2478?format=nexus" -o data-raw/alignments/T1281-M2478.nex
Other repos
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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