In McTavishLab/physcraperex: Physcraper Workflow Examples

knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
options(rmarkdown.html_vignette.check_title = FALSE)

Next:

• [] references
• [] yaml
• [] add bib file
• [] add physcraper citation
• [] add references section
• [] describe the output trees in number of tips, root, branch lengths, resolved nodes, etc.
• [] can we get the ingroup of an otol stored tree with rotl?
• [] alignment section:
• [] explain where the alignment is saved when downloaded with physcraper
• [] add a screen snippet of it
• [] add screenshots of treebase finding the alignment from the original tree

Done:

• [X] add merced cluster nsf grant to acknowledgments
• [X] add a comparison section

McTavishLab/physcraperex documentation built on April 10, 2021, 12:02 a.m.