Man pages for Mengbo-Li/protDP
Estimation of the Detection Probability Curve in Label Free Shotgun Proteomics Data
| cappedLogit_ztbinom | Fitting an empirical logistic spline curve for detection... |
| datasetA | Dataset A: Hybrid proteome data |
| datasetB | Dataset B: Single cell proteomes |
| datasetC | Dataset C: HepG2 technical replicate data |
| datasetD | Dataset D: Human blood plasma proteome |
| dpc | Detection probability curve for label free shotgun proteomics... |
| gatherResults | Wrapper function of all presented results |
| getNuisance | Get nuisance parameters and an initial estimation of the... |
| hyperparams | Estimation of hyperparameters for the empirical Bayes method |
| logitSplines_start | Get the initial estimates for a logistic spline fit by... |
| logit_ztbinom | Fitting an empirical logistic spline curve for detection... |
| plotDPC | Plot the detection probability curve |
| plotEmpSplines | Plot the fitted empirical spline of detected proportions to... |
| ratio2.5 | Supplementary Dataset : UPS1 spiked in yeast extract |
| shbheart | Supplementary Dataset: Sydney Heart Bank data |
