gatherResults: Wrapper function of all presented results

In Mengbo-Li/protDP: Estimation of the Detection Probability Curve in Label Free Shotgun Proteomics Data

Wrapper function of all presented results

Description

Wrapper function of all presented results

Usage

gatherResults(dat, b1.upper = 1, b0.upper = 0)

Arguments

dat	The log2-transformed intensity matrix where rows are precursors and columns are samples.
b1.upper	Upper bound for beta_1 when fitting the detection probability curve. Typically 1.
b0.upper	Upper bound for beta_0 when fitting an empirical regression spline.

Value

List of results including the logistic-spline fits, the deviance partitioning plot, the capped logit-linear fit and the fitted detection probability curve assuming normal observed intensities.

Examples

## See the vignettes.

Mengbo-Li/protDP documentation built on Oct. 26, 2023, 9:50 p.m.