cellTypeScore: cellTypeScore

In Miaoyx323/stCancer: stCancer

cellTypeScore

Description

calculate the score of some cell types

Usage

cellTypeScore(
  SeuratObject,
  savePath = NULL,
  geneSets = NULL,
  select = "main",
  assay = NULL,
  method = "average",
  species = "human",
  total.image.name = "cellTypeScore.png",
  crop = TRUE,
  ...
)

Arguments

SeuratObject	A Seurat object
savePath	Path to save
geneSets	Gene sets
select	Which level of cell types
assay	Assay
method	Method to calculate scores

Value

A Seurat object after scoring

Miaoyx323/stCancer documentation built on Nov. 14, 2024, 5:31 p.m.