runCNVAnalysis: runCNVAnalysis
In Miaoyx323/stCancer: stCancer
runCNVAnalysis R Documentation
runCNVAnalysis
Description
CNV analysis
Usage
runCNVAnalysis(
SeuratObject,
savePath,
analysis.func = "copyKAT",
ref.object = NULL,
species = "human",
...
)
Arguments
SeuratObject
A Seurat object
savePath
A path to save the results files
analysis.func
The function used to analyze CNV
ref.object
A seuratObject used as the reference if using InferCNV
species
"human" or "mouse", only human data can be used in CNV analysis by copyKAT
Value
A list containing a seuratObject, a list of results of intermediate process,
a list of plots and a logical value to show whether the process completed successfully
Miaoyx323/stCancer documentation built on Nov. 14, 2024, 5:31 p.m.
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| runCNVAnalysis | R Documentation |
runCNVAnalysis
Description
CNV analysis
Usage
runCNVAnalysis(
SeuratObject,
savePath,
analysis.func = "copyKAT",
ref.object = NULL,
species = "human",
...
)
Arguments
SeuratObject |
A Seurat object |
savePath |
A path to save the results files |
analysis.func |
The function used to analyze CNV |
ref.object |
A seuratObject used as the reference if using InferCNV |
species |
"human" or "mouse", only human data can be used in CNV analysis by copyKAT |
Value
A list containing a seuratObject, a list of results of intermediate process, a list of plots and a logical value to show whether the process completed successfully
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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