runInferCNV: runInferCNV
In Miaoyx323/stCancer: stCancer

runInferCNV

R Documentation

runInferCNV

Description

Analyze CNV using the method of InferCNV

Usage

runInferCNV(
  SeuratObject,
  savePath,
  ref.object,
  cluster.info = "seurat_clusters",
  species = "human",
  genome = "hg19"
)

Arguments

`SeuratObject`	A seuratObejct to analyze CNV
`savePath`	A path to store the results
`ref.object`	A seuratObject used as the reference if using InferCNV
`cluster.info`	The label to store cluster information in 'SeuratObject@meta.data'
`species`	"human" or "mouse"
`genome`

Value

A list containing a seuratObject, a list of results of intermediate process, a list of plots and a logical value to show whether the process completed successfully

Miaoyx323/stCancer documentation built on Nov. 14, 2024, 5:31 p.m.