heatmap3: Heatmap3

In Michael-L-Miller/CoveRageAnalysis: Detect Focal Gene Amplification and EGFRvIII from Targeted NGS

Description

This function generates heatmaps

Usage

heatmap3(x, Rowv = TRUE, Colv = if (symm) "Rowv" else TRUE,
  distfun = dist, hclustfun = hclust, dendrogram = c("both", "row",
  "column", "none"), symm = FALSE, scale = c("none", "row", "column"),
  na.rm = TRUE, revC = identical(Colv, "Rowv"), add.expr, breaks,
  symbreaks = max(x < 0, na.rm = TRUE) || scale != "none",
  col = "heat.colors", colsep, rowsep, sepcolor = "white",
  sepwidth = c(0.05, 0.05), cellnote, notecex = 1, notecol = "cyan",
  na.color = par("bg"), trace = c("none", "column", "row", "both"),
  tracecol = "cyan", hline = median(breaks), vline = median(breaks),
  linecol = tracecol, margins = c(5, 5), ColSideColors, RowSideColors,
  side.height.fraction = 0.3, cexRow = 0.2 + 1/log10(nr), cexCol = 0.2 +
  1/log10(nc), labRow = NULL, labCol = NULL, key = TRUE, keysize = 1.5,
  density.info = c("none", "histogram", "density"), denscol = tracecol,
  symkey = max(x < 0, na.rm = TRUE) || symbreaks, densadj = 0.25,
  main = NULL, xlab = NULL, ylab = NULL, lmat = NULL, lhei = NULL,
  lwid = NULL, ColSideColorsSize = 1, RowSideColorsSize = 1,
  KeyValueName = "Value", ...)

Michael-L-Miller/CoveRageAnalysis documentation built on May 27, 2019, 11:48 p.m.