Files in Michorlab/estipop
ESTIpop is a simulation software tool written in C++ to simulate and estimate rate parameters for general multitype branching processes
.gitattributes
.gitignore
DESCRIPTION
LICENSE
Makevars
Makevars.win
NAMESPACE
R/RcppExports.R
R/customize.R
R/estimate.R
R/estipop.R
R/likelihoods.R
R/process_model.R
R/simulation.R
R/utils.R
README.html
README.md
README_files/README.Rmd
README_files/figure-gfm/sup1-1.png
README_files/images/2typereistance.PNG
README_files/images/Presentation1.pptx
README_files/images/bd2-1.pdf
README_files/images/bd4-1.pdf
README_files/images/bd6-1.pdf
README_files/images/birth.PNG
README_files/images/birthdeath.PNG
README_files/images/birthdeathmutation.PNG
README_files/images/birthmutation.PNG
README_files/images/transition.PNG
README_files/images/transition_new.PNG
cleanup
configure
configure.ac
inst/._extras
inst/._include
inst/extras/._Makevars.in
inst/extras/._Makevars.win
inst/extras/Makevars
inst/extras/Makevars.in
inst/extras/Makevars.win
inst/extras/timedependent_template.cpp
inst/extras/timedependent_template.h
inst/include/ConstantRate.h
inst/include/Rate.h
inst/include/StopCriterion.h
inst/include/System.h
inst/include/Update.h
inst/include/helpers.h
man/bp_loglik.Rd
man/branch.Rd
man/branch_approx.Rd
man/check_valid.Rd
man/compile_timedep.Rd
man/compute_mu_sigma.Rd
man/create_timedep_template.Rd
man/dot-pop.Rd
man/dot-pop_off.Rd
man/estimate.Rd
man/estimate_td.Rd
man/estipop.Rd
man/format_sim_data.Rd
man/generate_cpp.Rd
man/gmbp3.Rd
man/is_const.Rd
man/moments.Rd
man/new_process_model.Rd
man/new_rate.Rd
man/new_stop_criterion.Rd
man/new_transition.Rd
man/process_model.Rd
man/rate.Rd
man/reload.Rd
man/stop_criterion.Rd
man/timeDepBranch.Rd
man/transition.Rd
man/validate_process_model.Rd
man/validate_rate.Rd
man/validate_stop_criterion.Rd
man/validate_transition.Rd
man/walk_ast.Rd
src/ConstantRate.cpp
src/Controller.cpp
src/Makevars
src/Makevars.in
src/Makevars.win
src/Rate.cpp
src/RcppExports.cpp
src/StopCriterion.cpp
src/System.cpp
src/Update.cpp
src/helpers.cpp
tests/test-estimation.R
tests/test-simulation.R
tests/testthat.R
tests/testthat/test-estimation-inputs.R
tests/testthat/test-models.R
tests/testthat/test-moments.R
tests/testthat/test-parsing.R
tests/testthat/test-simulation-inputs.R
