Description Usage Arguments Value

Plots a sample statistic, such as the mean or median, and associated bootstrapped 95% confidence intervals for specified subsets of observations. Facilitates hypothesis testing by allowing a) application of the Benjamini-Hochberg procedure to control the alse discovery rate and b) specification of a minimum effect size.

1 2 3 4 5 6 7 8 9 10 11 | ```
ggbootUV(data, resp, xAxis, col = NULL, facet = NULL, diff = NULL,
calcStat = mean, B = 10, alpha = 0.05, nSide = 1, altSide,
method = "bca", fdr = 0.01, minEff = 0, hLineVec = NULL,
nullValue = 0, xLab = NULL, yLab = "Response", xAxisLabVec = NULL,
rotXText = FALSE, remXAxisMarks = FALSE, pointSize = 2,
errBarSize = 1, errBarSizeRatio = 2, errBarAlpha = 0.7,
errBarAlphaRatio = 2, eqErrBarWidth = TRUE, colLabName = NULL,
colourVec = c("darkorchid1", "springgreen2", "maroon1", "dodgerblue", "red",
"yellow3", "cyan2", "orange2"), colLabVec = NULL, facetLabVec = NULL,
facetScale = "free", nCol = 2, plotTblName = NULL,
sigIndType = "lineType", fontScaleFactor = 1)
``` |

`data` |
dataframe. Has one row per observation and the column names specified below. |

`resp` |
unquoted expression. Response variable name. |

`xAxis` |
unquoted expression. X-axis variable name. |

`col` |
unquoted expression. Colour variable name. |

`facet` |
unquoted expression. Facet variable name. |

`diff` |
unquoted expression. Difference variable name. Must be a binary variable, preferrably ('0','1') as then it is clear that the difference is the amount by which the observations labelled '1' are greater than the observations labelled '0'. |

`calcStat` |
function olr character. Bootstrap statistic function. Functions other than mean or median used at own risk. |

`B` |
integer. Number of bootstrap samples per subgroup. |

`alpha` |
numeric. 1- |

`nSide` |
1 or 2. Number of sides of the hypothesis tests. |

`method` |
'bca' for BCa or 'perc' for percentile. Bootstrap confidence interval and |

`fdr` |
numeric. False discovery rate. |

`minEff` |
numeric. Minimum effect size. Default is 0. |

`hLineVec` |
numeric vector. Heights of dashed horizontal lines to plot. Useful for indicating minimum effect size. |

`nullValue` |
numeric. Null hypothesis value for statistic. |

`xLab, yLab` |
characeter. X- and y-axis titles. Optional. |

`xAxisLabVec` |
named character vector. Labels for x-axis variable. Optional. |

`rotXText` |
logical. If TRUE, then the x-axis text is rotated 90 degrees clockwise. |

`remXAxisMarks` |
logical. If TRUE, then the x-axis ticks and text are removed. |

`pointSize` |
numeric. Size of plot points |

`errBarSize` |
numeric. Size of error bar |

`errBarSizeRatio` |
numeric. How many times larger the size is of the statistically significant error bars than the non-statistically significant bars are. |

`errBarAlpha` |
numeric. Error bar alpha |

`errBarAlphaRatio` |
numeric. How many times greater the alpha is of the statistically significant error bars than the non-statistically significant bars are. |

`eqErrBarWidth` |
logical. If |

`colLabName` |
character. Name for colour legend. Optional. |

`colourVec` |
character vector. Colours for colour scale. Optional. Label with factor levels to match levels to colours manually. |

`colLabVec` |
named character vector. Labels for colour variable. Optional. |

`facetScale` |
'free', 'free_x' or 'free_y'. Facet scale. |

`nCol` |
numeric. Number of columns to use. |

`plotTblName` |
character. If not NULL, then the dataframe used to plot is saved to global environment with name |

`sigIndType` |
character vector. Must contain at least one of |

`fontScaleFactor` |
integer. Factor by which to scale the text size from the default. |

`altSde` |
'high', 'low' or 'both'. Character specifying the alternative hypothesis relative to the null hypothesis. Note that you must still specify nSide, even if altSide is specified. |

`facetlabeVec` |
named character vector. Labels for facet fariable. Optional. |

a ggplot2 object

MiguelRodo/ggboot documentation built on May 1, 2018, 12:22 a.m.

Embedding an R snippet on your website

Add the following code to your website.

For more information on customizing the embed code, read Embedding Snippets.