Man pages for MikeKSmith/MSToolkit
The MSToolkit Library For Clinical Trial Design
| addResidualError | Add residual error to the response. |
| allocateTreatments | Allocate treatment to subjects |
| analyzeData | Analyze simulated data replicates |
| analyzeRep | Analyse a single replicate of data |
| applyPredCode | Parses and applys NONMEM statements |
| calculateDiffsFromBase | Calculate differences from baseline |
| calculateObsSummary | Calculate Observed Data Summary |
| calculateSimTrialMeans | Calculate Simulated Trial Means |
| checkColNames | Check that column names are found in a data frame |
| checkDropOutFun | check the user supplied drop out function |
| checkMacroFormat | Check the macro format dataset |
| checkMicroFormat | Check that an input data structure is a valid "Micro... |
| checkSimAlpha | Parse alpha value |
| checkSymmetricPDMatrix | Checks if a matrix is symmetric and positive definite |
| compileSummary | Compile all Micro or Macro evaluation data |
| convertSASIncludeRows | Create a SAS 'IF' statement |
| convertToSASCode | Convert R to SAS Statements |
| createContinuousCovariates | Create a set of continuous covariates |
| createCovariates | Create covariates |
| createDirectories | Create replicate data, micro evaluation, and macro evaluation... |
| createDiscreteCovariates | Create covariates from a discrete distribution |
| createDropout | Adds dropout to a simulated dataset |
| createEmptyMicro | Create an empty micro evaluation data frame |
| createExternalCovariates | Create covariates by sampling from an external file |
| createExternalParameters | Sample parameters from an external file |
| createInterims | Create the interim flag |
| createMCAR | Missing Completely at Random |
| createNmMatrix | Creates a matrix based on a "NONMEM style" vector |
| createNormalParameters | Create parameters based on a multivariate normal distribution |
| createParameters | Creates parameters for subjects in each replicate |
| createResponse | High-level function for the response component. |
| createResponseVariable | Create a response from a data set and an equation |
| createTimeVaryingCovariates | Create a set of time-varying covariates |
| createTreatments | Create Treatment Design Data |
| createTvDefinition | Create "Typical Value" Definition |
| ectdStop | Error handling functions for the ectd package. |
| generateData | Generate simulated data replicates |
| getEctdColName | Control of default column names |
| getReplicates | Trial replicates vector |
| initialChar | Convert the first letter that occurs in a string to lower... |
| interimAnalysis | interim Analysis |
| macroEvaluation | Macro Evaluation |
| MSToolkit-package | MSToolkit: The MSToolkit Library For Clinical Trial Design |
| parseCharInput | Parse a comma seperated string |
| parseCovMatrix | Parse a covariance matrix |
| parseHashString | Process a string seperated by hash symbols or a vector (or... |
| parseRangeCode | Parse a numerical range expression |
| parseRCode | Parse R Code |
| performAnalysis | Runs the analysis code against one dataset |
| readAllData | Read scenario data |
| readData | Read scenario data |
| removeDirectories | Remove directories |
| setEctdDataMethod | Current data storage method |
| setEctdExternalPath | Controls paths to a set of external execution paths |
| setEctdVerbose | MSToolkit package options |
| summarizeTrialMeans | Summarize Trial Mean Data |
| validNames | Check if a character string is a valid R variable name |
| writeData | Write scenario data |
| writeLogFile | Write a job log file |
