Files in MikeKSmith/MSToolkit
The MSToolkit Library For Clinical Trial Design

.Rbuildignore

.github/.gitignore

.github/workflows/R-CMD-check.yaml

.github/workflows/pkgdown.yaml

.github/workflows/test-coverage.yaml

.gitignore

DESCRIPTION

LICENSE

LICENSE.md

NAMESPACE

NEWS.md R/MSToolkit-package.R R/addResidualError.R R/allocateTreatments.R R/analyzeData.r R/analyzeRep.R R/applyPredCode.R R/calculateDiffsFromBase.R R/calculateObsSummary.R R/calculateSimTrialMeans.R R/checkColNames.R R/checkDropOutFun.R R/checkMacroFormat.R R/checkMicroFormat.R R/checkSimAlpha.R R/checkSymmetricPDMatrix.R R/compileSummary.R R/convertSASIncludeRows.R R/convertToSASCode.R R/createContinuousCovariates.R R/createCovariates.R R/createDirectories.r R/createDiscreteCovariates.R R/createDropout.R R/createEmptyMicro.R R/createExternalCovariates.R R/createExternalParameters.R R/createInterims.R R/createMCAR.R R/createNmMatrix.R R/createNormalParameters.R R/createParameters.R R/createResponse.R R/createResponseVariable.R R/createTimeVaryingCovariates.R R/createTreatments.R R/createTvDefinition.R R/ectdStop.R R/ectdWarning.R R/generateData.R R/getReplicates.R R/initialChar.R R/interimAnalysis.R R/internal.datastorage.R R/macroEvaluation.R R/metaManagement.R R/operators.R R/parseCharInput.R R/parseCovMatrix.R R/parseHashString.R R/parsePredCode.R R/parseRCode.R R/parseRangeCode.R R/performAnalysis.R R/readAllData.R R/readData.R R/removeDirectories.r R/summarizeTrialMeans.R

R/sysdata.rda

R/utils.R R/validNames.R R/writeData.r R/writeLogFile.R R/zzz.R README.Rmd README.md

TODO

WiP_STASH/R/.-package.R WiP_STASH/R/createNmParSamples.R WiP_STASH/R/mstoolkitUnitTests.R

WiP_STASH/tests/Makefile

WiP_STASH/tests/data/.svn/entries

WiP_STASH/tests/data/NONMEM/.svn/entries

WiP_STASH/tests/data/NONMEM/.svn/text-base/waso.ctl.svn-base

WiP_STASH/tests/data/NONMEM/.svn/text-base/waso.out.svn-base

WiP_STASH/tests/data/NONMEM/.svn/text-base/waso.tab.svn-base

WiP_STASH/tests/data/NONMEM/.svn/text-base/wasodata.csv.svn-base

WiP_STASH/tests/data/NONMEM/waso.ctl

WiP_STASH/tests/data/NONMEM/waso.out

WiP_STASH/tests/data/NONMEM/waso.tab

WiP_STASH/tests/data/NONMEM/wasodata.csv

WiP_STASH/tests/data/analyseRep/.svn/entries

WiP_STASH/tests/data/analyseRep/ReplicateData/.svn/entries

WiP_STASH/tests/data/analyseRep/ReplicateData/.svn/text-base/replicate0001.csv.svn-base

WiP_STASH/tests/data/analyseRep/ReplicateData/.svn/text-base/replicate0002.csv.svn-base

WiP_STASH/tests/data/analyseRep/ReplicateData/.svn/text-base/replicate0003.csv.svn-base

WiP_STASH/tests/data/analyseRep/ReplicateData/replicate0001.csv

WiP_STASH/tests/data/analyseRep/ReplicateData/replicate0002.csv

WiP_STASH/tests/data/analyseRep/ReplicateData/replicate0003.csv

WiP_STASH/tests/data/compileSummary/.svn/entries

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WiP_STASH/tests/testdata.datastorage/.svn/text-base/microSummary.csv.svn-base

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WiP_STASH/tests/testdata.supportfunctions/testdata.createEmptyMicro.1.csv

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_pkgdown.yml

codecov.yml

data-raw/ReplicateSample.csv

data-raw/internalData.R

data-raw/micro0001.csv

data-raw/microSummary.csv

inst/COPYRIGHT

inst/ECTD.ini

inst/sasAnalysis.sas

man/MSToolkit-package.Rd man/addResidualError.Rd man/allocateTreatments.Rd man/analyzeData.Rd man/analyzeRep.Rd man/applyPredCode.Rd man/calculateDiffsFromBase.Rd man/calculateObsSummary.Rd man/calculateSimTrialMeans.Rd man/checkColNames.Rd man/checkDropOutFun.Rd man/checkMacroFormat.Rd man/checkMicroFormat.Rd man/checkSimAlpha.Rd man/checkSymmetricPDMatrix.Rd man/compileSummary.Rd man/convertSASIncludeRows.Rd man/convertToSASCode.Rd man/createContinuousCovariates.Rd man/createCovariates.Rd man/createDirectories.Rd man/createDiscreteCovariates.Rd man/createDropout.Rd man/createEmptyMicro.Rd man/createExternalCovariates.Rd man/createExternalParameters.Rd man/createInterims.Rd man/createMCAR.Rd man/createNmMatrix.Rd man/createNormalParameters.Rd man/createParameters.Rd man/createResponse.Rd man/createResponseVariable.Rd man/createTimeVaryingCovariates.Rd man/createTreatments.Rd man/createTvDefinition.Rd man/ectdStop.Rd man/generateData.Rd man/getEctdColName.Rd man/getReplicates.Rd man/initialChar.Rd man/interimAnalysis.Rd man/macroEvaluation.Rd man/parseCharInput.Rd man/parseCovMatrix.Rd man/parseHashString.Rd man/parseRCode.Rd man/parseRangeCode.Rd man/performAnalysis.Rd man/readAllData.Rd man/readData.Rd man/removeDirectories.Rd man/setEctdDataMethod.Rd man/setEctdExternalPath.Rd man/setEctdVerbose.Rd man/summarizeTrialMeans.Rd man/validNames.Rd man/writeData.Rd man/writeLogFile.Rd tests/testthat.R

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vignettes/.gitignore

vignettes/MSToolkit_intro_vig.Rmd vignettes/analyze_data.Rmd vignettes/generate_data.Rmd vignettes/references.Rmd vignettes/simulation_overview.Rmd

MikeKSmith/MSToolkit documentation built on Feb. 15, 2024, 5:32 p.m.

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