filter_counts_by_quantile: Filter observed counts by quantile.

In Militeee/rcongas: Copy Number Alterations genotyping from single-cell multiomics

Filter observed counts by quantile.

Description

Filter observed counts by quantile.

Usage

filter_counts_by_quantile(x, upper_quantile = 0.98)

Arguments

x	An input RNA/ATAC dataset where entries are indexeable by genomic coordinate: "chr", "from" and "to".
upper_quantile	The maximum quantile to determine cuts. If a value is above the quantile it is removed

Value

The input data with removed entries.

Examples

data('example_input')
filter_counts_by_quantile(example_input$rna, upper_quantile = .98)
filter_counts_by_quantile(example_input$atac, upper_quantile = .98)

Militeee/rcongas documentation built on Nov. 1, 2024, 2:38 a.m.