Man pages for MoBiodiv/mobr
Measurement of Biodiversity
| avg_nn_dist | Compute average nearest neighbor distance |
| calc_beta_div | Calculate beta diversity from sites by species table. |
| calc_chao1 | Estimation of species richness |
| calc_comm_div | Calculate biodiversity statistics from sites by species... |
| calc_comm_div_ci | Compute non-parametric confidence intervals across diversity... |
| calc_C_target | Calculate the recommended target coverage value for the... |
| calc_div | Compute various diversity indices from a vector of species... |
| calc_PIE | Calculate probability of interspecific encounter (PIE) |
| calc_S_C | Calculate species richness for a given coverage level. |
| calc_SPIE | Calculate S_PIE |
| Chat | Calculate expected sample coverage C_hat |
| compare_samp_rarefaction | Compare all sample-based curves (random, spatially... |
| fire_comm | Fire data set |
| get_delta_stats | Conduct the MoB tests on drivers of biodiversity across... |
| get_mob_stats | Carry out biodiversity metric comparisons between groups. |
| get_null_comm | Generate a null community matrix |
| get_samples | Generate distribution of sampled community matrices from an... |
| invChat | Number of individuals corresponding to a desired coverage... |
| inv_comm | Invasive plants dataset |
| kNCN_average | Construct spatially constrained sample-based rarefaction... |
| make_mob_in | Create the 'mob_in' object. |
| mobr | Measurement of Biodiversity in R |
| plot_abu | Plot distributions of species abundance |
| plot_comm_div | Plot alpha-, beta-, and gamma-scale biodiversity statistics... |
| plot.mob_out | Plot the multiscale MoB analysis output generated by... |
| plot.mob_stats | Plot statistics for a MoB analysis |
| plot_N | Plot the relationship between the number of plots and the... |
| plot_rarefaction | Plot rarefaction curves for each treatment group |
| rarefaction | Rarefied Species Richness |
| subset.mob_in | Subset the rows of the mob data input object |
| tank_comm | Cattle tank data set |
