Measurement of Biodiversity in R

avg_nn_dist | Compute average nearest neighbor distance |

calc_biodiv | Calculate biodiversity statistics from sites by species... |

calc_chao1 | Estimation of species richness |

calc_PIE | Calculate probability of interspecific encounter (PIE) |

deltaS_N | Difference in S due to N |

effect_agg_continuous | Auxiliary function for get_delta_stats() Effect of... |

effect_agg_discrete | Auxiliary function for get_delta_stats() Effect of... |

effect_N_continuous | Auxiliary function for get_delta_stats() Effect of N when... |

effect_N_discrete | Auxiliary function for get_delta_stats() Effect of N when... |

effect_SAD_continuous | Auxiliary function for get_delta_stats() Effect of SAD when... |

effect_SAD_discrete | Auxiliary function for get_delta_stats() Effect of SAD when... |

get_delta_stats | Conduct the MoB tests on drivers of biodiversity across... |

get_mob_stats | Calculate sample based and group based biodiversity... |

get_overall_p | Auxiliary function for effect_ functions Compute an overall... |

get_plot_dens | Auxiliary function for get_delta_stats() Returns the... |

get_sample_curves | Auxiliary function for get_delta_stats() Obtain the swap... |

ind_rare_perm | Compute permutation derived individual-based rarefaction... |

make_mob_in | Create the 'mob_in' object. |

mobr | mobr: measurement of biodiversity across scales |

overlap_effects | Plot summary graphics of the effect on species richness |

permute_comm | Permute community matrix within groups |

plot_abu | Plot distributions of species abundance |

plot.mob_out | Plot mob curves |

plot.mob_stats | Plot alpha- and gamma-scale biodiversity statistics for a MoB... |

plot_N | Plot the relationship between the number of plots and the... |

plot_rarefaction | Plot rarefaction curves for each treatment group |

plotStacked | Stacked plot by Marc Taylor (@marchtaylor on gitHub) |

print.mob_in | Print a shortened version of the mob_in object |

print.mob_out | Print a shortened version of the mob_out object |

rarefaction | Rarefied Species Richness |

sphere_dist | Internal function for distance matrix assuming inputs are lat... |

subset.mob_in | Subset the rows of the mob data input object |

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