Man pages for MolecularPathologyLab/MmCMS
CMS-based Molecular Subtyping for CRC Mouse Tissue
| cohensKappa | Cohen's kappa coefficient |
| corCosine | cosine correlation |
| ematAdjust | matrix row-wise scaling and centering |
| GO.BP.list_mus | GO_BP geneset for mouse |
| MmCMS | CMS classification |
| ntp | nearest template prediction |
| option.C.geneset.list_mus | option.C geneset for mouse |
| subHeatmap | ntp heatmap |
| subSetNA | sets NTP results to NA based on p-value cutoff |
| template.CMS.A | Mouse CMS template (option A) |
| template.CMS.B | Mouse CMS template (option B) |
| template.CMS.C | Mouse CMS template (option C) |
| TestData_gemm | Expression profile of GEMMs |
