subSetNA: sets NTP results to NA based on p-value cutoff
In MolecularPathologyLab/MmCMS: Calling CMS for mouse tissue
subSetNA R Documentation
sets NTP results to NA based on p-value cutoff
Description
sets ntp predictions to NA based on p-value or FDR
thresholds
Usage
subSetNA(res, pValue = 1, FDR = 1, verbose = TRUE)
Arguments
res
a data frame, result from ntp function.
pValue
a numeric, predictions with higher p-values are set to NA.
FDR
a numeric, predictions with higher FDR are set to NA.
verbose
logical, whether console messages are to be displayed.
Details
Replaces low-confidence predictions with NA.
Value
A data.frame where res$prediction's are set to NA based on
p-value or FDR threshold.
MolecularPathologyLab/MmCMS documentation built on Oct. 18, 2023, 10:42 p.m.
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| subSetNA | R Documentation |
sets NTP results to NA based on p-value cutoff
Description
sets ntp predictions to NA based on p-value or FDR
thresholds
Usage
subSetNA(res, pValue = 1, FDR = 1, verbose = TRUE)
Arguments
res |
a data frame, result from |
pValue |
a numeric, predictions with higher p-values are set to NA. |
FDR |
a numeric, predictions with higher FDR are set to NA. |
verbose |
logical, whether console messages are to be displayed. |
Details
Replaces low-confidence predictions with NA.
Value
A data.frame where res$prediction's are set to NA based on
p-value or FDR threshold.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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