extract_information_from_reference_genome: Extract information from reference genome
In Moritz-Kohls/virDisco2: Virus Discovery
Description
Usage
Arguments
Value
Examples
Description
The function extract_information_from_reference_genome
needs the file path to the formatted reference genome fasta-file
(in which one sequence is stored in one line; in the original fasta-file
there could be a line break after 80 characters) and extracts information
about the NC numbers, species, sequences and sequence lengths.
These information are stored as global variables for the simulation procedure afterwards.
Usage
1
2
3
extract_information_from_reference_genome(
formatted.reference_genome_fasta.file_path
)
Arguments
formatted.reference_genome_fasta.file_path
File path to formatted reference genome fasta file
Value
None
Examples
1
extract_information_from_reference_genome(formatted.reference_genome_fasta.file_path = file.choose()) # Path of formatted reference genome fasta file
Moritz-Kohls/virDisco2 documentation built on Feb. 13, 2020, 12:32 a.m.
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Description Usage Arguments Value Examples
Description
The function extract_information_from_reference_genome
needs the file path to the formatted reference genome fasta-file
(in which one sequence is stored in one line; in the original fasta-file
there could be a line break after 80 characters) and extracts information
about the NC numbers, species, sequences and sequence lengths.
These information are stored as global variables for the simulation procedure afterwards.
Usage
1 2 3 | extract_information_from_reference_genome(
formatted.reference_genome_fasta.file_path
)
|
Arguments
formatted.reference_genome_fasta.file_path |
File path to formatted reference genome fasta file |
Value
None
Examples
1 | extract_information_from_reference_genome(formatted.reference_genome_fasta.file_path = file.choose()) # Path of formatted reference genome fasta file
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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